Space Details:
Key
CISHELL
Name
CIShell Manual
Description
Created by
mwlinnem (Jan 14, 2011)
Available Pages:
Glossary
Home
CIShell Powered Tools
Algorithms
Adjacency Transitivity
Aggregate Data
Annotate K-Coreness
Annotate K-Coreness (Unweighted & Directed)
Arc Reciprocity
Attach Citation Indices from Google Scholar
Attach Citation Table from Google Scholar
Average Shortest Path
Average Weight vs End-point Degree
Barabási-Albert Scale-Free
Bing Geocoder
Bipartite Network Graph
Blondel Community Detection
Burst Detection
Can
Chord
Circular Hierarchy
Clustering Coefficient
Congressional District Geocoder
Convert to Generic Publication
Create an R Instance
Create Document Source Merging Table
Create Merging Table
Custom Graph Query
Custom Table Query
Degree & Strength
Degree Distribution
Delete Isolates
Detect Duplicate Nodes
Diameter
Dichotomize
DrL (VxOrd)
Dyad Reciprocity
Edge Sampling
Extract Author Bibliographic Coupling Network
Extract Author Citation Network
Extract Author Co-Citation Network
Extract Author Paper Network
Extract Authors
Extract Authors by Year
Extract Authors by Year for Burst Detection
Extract Awards
Extract Bipartite Network
Extract Co-Author Network
Extract Co-Author Network (Text Files)
Extract Co-Occurrence Network
Extract Co-PI Network
Extract Directed Network
Extract Document Bibliographic Coupling Network
Extract Document Citation Network (Core and References)
Extract Document Citation Network (Core Only)
Extract Document Co-Citation Network
Extract Document Co-Citation Network (Core and References)
Extract Document Co-Citation Network (Core Only)
Extract Documents
Extract Documents by Year for Burst Detection
Extract Document Source Bibliographic Coupling Network
Extract Document Source Citation Network (Core and References)
Extract Document Source Citation Network (Core Only)
Extract Document Source Co-Citation Network (Core and References)
Extract Document Source Co-Citation Network (Core Only)
Extract Document Sources
Extract Edges Above or Below Value
Extract Investigators
Extract K-Core
Extract K-Core (Unweighted & Directed)
Extract Keywords
Extract Longitudinal Summary
Extract New ISI Keywords by Year
Extract New ISI Keywords by Year for Burst Detection
Extract Nodes Above or Below Value
Extract Organizations
Extract Original Author Keywords by Year
Extract Original Author Keywords by Year for Burst Detection
Extract Paper Citation Network
Extract Raw Tables from Database
Extract Reference Co-Occurrence (Bibliographic Coupling) Network
Extract References by Year
Extract References by Year for Burst Detection
Extract Top Edges
Extract Top N% Records
Extract Top Nodes
Extract Top N Records
Extract Weighted Document-Document Network
Extract Word Co-Occurrence Network
Extract ZIP Code
Facebook Access Token
Facebook Friends Data
Facebook Mutual Friends
Fast Pathfinder Network Scaling
Flickr Reader
Force Directed with Annotation (prefuse beta)
Fruchterman-Reingold with Annotation (prefuse beta)
Geocoder
Geospatial Visualization
Choropleth Map
Geospatial Network Layout with Base Map
Proportional Symbol Map
Gephi
Get a Table from R
Global Connected Components
Google Citation User ID Search Algorithm
GUESS
Node Locking
HITS
Horizontal Bar Graph
Horizontal Bar Graph (not included version)
Hypergrid
Indegree Distribution
K-Nearest Neighbor
K-Nearest Neighbor (Java)
Load Existing Database
Load ISI File Into Database
Load ISI File with 'ISI flat format'
Load NSF File Into Database
Louvain Multilevel Refinement Community Detection
Lowercase, Tokenize, Stem, and Stopword Text
Stopword List
Map of Science via 554 Fields
Map of Science via Journals
Match References to Papers
Merge 2 Networks
Merge Document Sources
Merge Entities
Merge Identical ISI People
Merge Identical NSF People
MST-Pathfinder Network Scaling
Multipartite Joining
Nearest Neighbor Degree
Network Analysis Toolkit (NAT)
Node Betweenness Centrality
Node Degree
Node Indegree
Node Outdegree
Node Sampling
Outdegree Distribution
PageRank
Pathfinder Network Scaling
PRU
Radial Tree or Graph (prefuse alpha)
Radial Tree or Graph with Annotations (prefuse beta)
Random Graph
Randomize Weights
Read citation indices for a given set of authors
Reconcile Journal Names
Remove Edge Attributes
Remove ISI Duplicate Records
Remove Node Attributes
Remove Rows with Multitudinous Fields
Remove Self Loops
Run Rgui
Send a Table to R
Shortest Path Distribution
Single Node In-Out Degree Correlations
Louvain Community Detection
Slice Table by Time
SLM Community Detection
Snowball Sampling (N nodes)
Specified (Prefuse beta)
Strength Distribution
Strength vs Degree
Strong Component Clustering
Suggest ISI People Merges
Symmetrize
TARL (Topics, Aging and Recursive Linking)
Temporal Bar Graph
Tree Map (prefuse beta)
Tree View (prefuse beta)
Trim by Degree
Twitter Reader
Authenticating with Twitter's API
Update Network by Merging Nodes
Watts-Strogatz Clustering Coefficient
Watts Strogatz Clustering Coefficient over K
Watts-Strogatz Small World
Weak Component Clustering
Weight Distribution
Workflow Module
Workflow Tracker
XML to CSV Algorithm
Yahoo! Geocoder
Plugins (coming soon)
Algorithm Plugins
Tool Plugins
Library Plugins
CIShell Core Plugins
OSGi Plugins
Misc. Common Tool Documentation
Data Formats
Bibtex (.bib)
TreeML (.xml)
CSV (*.csv)
Edgelist (.edge)
Endnote Export Format (.enw)
GraphML (.xml or .graphml)
ISI (*.isi)
NSF csv format (.nsf)
NSF format (.nsf)
Pajek (*.net)
Scopus format (*.scopus)
XGMML (.xml)
NWB (.nwb)
Pajek Matrix (.mat)
CIShellJSON (.json, .cishellgraph.json, .cishelltable.json)
Datasets
CIShell Screenshots
CIShell 1.0 Documentation and Developer Resources
Miscellaneous Documentation
FAQ
Old Developer Notes
CIWeb Implementation Proposals (old)
Data Management (old)
Diagrams (old)
Dilemmas and Thoughts (old)
Initial Design Thoughts (old)
Resources (old)
Web Services Alternatives (old)
WSRF (old)
Algorithm Developer's Guide
Accessing the OSGi Console in CIShell tools
CIShell Basics
Creating a Hello World Java Algorithm
How Algorithms Work - A Guide to Algorithm Plugins in CIShell
Integrating 3rd-party libraries
Integrating a Non-Java Program As An Algorithm
Practical Java Algorithm Development
Setting up the Development Environment
Where To Learn More
Stuff from old Wiki
News (old)
Download
Contact Us
CIShell Papers
CIShell 2.0 Developer Documentation
CIShell 2.0 Basics
CIShell 2.0 - Setting Up the Development Environment
Developing a Single Plugin
Accessing the OSGi Console
Hello World Tutorial
Hackathon 2012 @ Microscopes Workshop
Hackathon Result
Manipulate Tabular Data
Quick Start
Clone a fresh local CIShell repository and check out into Eclipse
Setup SSH on Eclipse and Git
Supported Data Formats
Tycho-era development and build setup
Git Setup for CIShell
Using Maven with a Hello World Plugin for CIShell
Eclipse development setup for CIShell and Sci2
Source Code Repository Listing
Vivek's work on Sci2 64 bit Win exe fix, SVN to Git repo conversion, Sci2 plugin testing